I am brand new to clearcanvas and to DICOM files in general so right now I am just trying to get a simple desktop application working (.NET and C#). I have added the clearcanvas dll's to my project but I'm just not sure how I would go about actually reading in a DICOM file. Ideally I would like to be able to access all of the tags separately after I have read in the file.
I would really appreciate just some initial code that can get me started.
Thanks,
You should be able to do something as simple as this:
string filename = "file.dcm";
DicomFile theFile = new DicomFile(filename);
theFile.Load(DicomReadOptions.Default);
foreach (DicomAttribute attribute in theFile.DataSet)
{
Console.WriteLine("Tag: {0}, Value: {1}", attribute.Tag.Name, attribute.ToString());
}
The DicomFile object is the core class for manipulating DICOM files. It has MetaInfo and DataSet properties which are DicomAttributeCollections contain the tags in the file. Each DicomAttribute within the DicomAttributeCollection has methods and properties to retrieve the attribute values.
Related
I am trying to do what I thought would be a simple task, but can't figure it out.
I have created a new Xamerin Forms project (using .net standard, as sharing strategy,) and it looks like this:
I created a text file and I want to read it into an array so I can use it in my app.
I added the text file to my project (by adding it to the top project, which doesn't have an OS associated with it), here:
In my app I have the following code:
InitializeComponent ();
//Define our array variable
string[] quotations = new string[10];
//Read the text from text file and populate array
StreamReader SR = new StreamReader(#"Quotations.txt");
for (int i = 0; i < 9; i++)
{
quotations[i] = SR.ReadLine();
}
Quote.Text = quotations[0];
//Close text file
SR.Close();
...
I have checked the properties for the file, and set them to 'build action: embedded resource', in the top project.
(I haven't added the file into the individual OS projects...)
When I run my application, on IOS it generates an exception, and exits the app almost as soon as it started:
Unhandled Exception: System.IO.FileNotFoundException:
How can I attach a file to my project, and read the contents into an array , on IOS?
Thanks
new StreamReader(#"Quotations.txt"); loads a file from the file system, but your data isn't in the file system - it is embedded in the assembly.
Embedded resources need to be accessed in a special way - in particular via yourAssembly.GetManifestResourceStream(resourceName). Note that the embedded name might not be quite what you expect, so the best thing to do is to (as a quick test) use yourAssembly.GetManifestResourceNames() and write out the names that are embedded. That'll tell you the one to actually include as resourceName. Once you have the Stream, you can use a new StreamReader(theResourceStream) on it.
Note: the easiest way to get yourAssembly is something like typeof(SomeTypeInYourAssembly).Assembly.
I have been applying what I have learned so far in Bob Tabors absolute beginners series and I wrote a small console word game for my daughter that requires me to generate a random 5 letter word.
I was previously using File.ReadAllLines(path) to generate a string array from a text file (wordlist.txt) on my system and Random.next to generate the index I would pull from the array.
I learned from some posts here how to embed the file as a resource but now I am unable to find the syntax to point to it (path). Or do I have to access it differently now that it is embedded?
Thanks in advance
Without a good, minimal, complete code example it is impossible to offer specific advice.
However, the basic issue is this: when you embed a file as a resource, it is no longer a file. That is, the original file still exists, but the resource itself is not a file in any way. It is stored as some specific kind of data in your assembly; resources embedded from file sources generally wind up as binary data objects.
How to use this data depends on what you mean by "embed". There are actually two common ways to store resources in a C# program: you can use the "Resources" object in the project, which exposes the resource via the project's ...Properties.Resources class (which in turn uses the ResourceManager class in .NET). Or you can simply add the file to the project itself, and select the "Embedded Resource" build option.
If you are using the "Resources" designer, then there are a couple of different ways you might have added the file. One is to use the "New Text File..." option, which allows you to essentially copy/paste or type new text into a resource. This is exposed in code as a string property on the Properties.Resources object. The same thing will happen if you add the resource using the "Existing File..." option and select a file that Visual Studio recognizes as a text file.
Otherwise, the file will be included as a byte[] object exposed by a property in the Properties.Resources class.
If you have used the "Embedded Resource" build option instead of the "Resources" designer, then your data will be available by calling Assembly.GetManifestResourceStream(string) method, which returns a Stream object. This can be wrapped in StreamReader to allow it to be read line-by-line.
Direct replacements for the File.ReadAllLines(string) approach would look something like the following…
Using "Embedded Resource":
string[] ReadAllResourceLines(string resourceName)
{
using (Stream stream = Assembly.GetEntryAssembly()
.GetManifestResourceStream(resourceName))
using (StreamReader reader = new StreamReader(stream))
{
return EnumerateLines(reader).ToArray();
}
}
IEnumerable<string> EnumerateLines(TextReader reader)
{
string line;
while ((line = reader.ReadLine()) != null)
{
yield return line;
}
}
Using Properties.Resources:
You can do something similar when using the Properties.Resources class. It looks almost identical:
string[] ReadAllResourceLines(string resourceText)
{
using (StringReader reader = new StringReader(resourceText))
{
return EnumerateLines(reader).ToArray();
}
}
called like string[] allLines = ReadAllResourceLines(Properties.Resources.MyTextFile);, where MyTextFile is the property name for the resource you added in the designer (i.e. the string you pass in that second example is the text of the file itself, not the name of the resource).
If you added an existing file that Visual Studio didn't recognize as a text file, then the property type will be byte[] instead of string and you'll need yet another slightly different approach:
string[] ReadAllResourceLines(byte[] resourceData)
{
using (Stream stream = new MemoryStream(resourceData))
using (StreamReader reader = new StreamReader(stream))
{
return EnumerateLines(reader).ToArray();
}
}
Note that in all three examples, the key is that the data winds up wrapped in a TextReader implementation, which is then used to read each line individually, to populate an array. These all use the same EnumerateLines() helper method I show above.
Of course, now that you see how the data can be retrieved, you can adapt that to use the data in a variety of other ways, in case for example you don't really want or need the text represented as an array of string objects.
If you are using The Resource file and added a text file you could use
string text=Properties.Resources.<ResourceName>
here Resources is default Resource for your project .If you have added a custom Resource File you can use its name instead of Properties.Resources
if your content is a file then it is represented as a byte.In your case for simple Text it will be an string if you have included a Text File.
for any other file you can use the syntax for converting content to text(if it is text) as
string text=Encoding.ASCII.GetString(Properties.Resources.<ResourceName>);
if your file has any other encoding (as UTF Unicode ) you can use UTF8 or such classes for that under Encoding
I am using ini file to store my configuration in my c# gui.
but when i start my gui again , and save the configuration, the previous saved configuration gets overwritten.
IS there a way to keep on saving configurations ?
You want to use an app.config file instead of your .ini. You access the settings in it using the ConfigurationManager from the System.Configuration namespace. You can even create custom configuration sections by creating classes that inherit from ConfigurationSection. That will give you intellisense support of your config file, as well.
One example of that (it's using asp.net, but it works for any .net code) is here.
Edit: Re-reading your question, I'm unclear on if you're trying to save application settings (app.config), or if you're trying to save session data to disk (saving records or serializing objects). If the former, look at app.config. You can even have multiple items that set the same "settings" but with different values (such as having multiple SQL Connection strings) and then call them by some parameter you obtain from a user.
If you're trying to save session data/state, then you want to serialize your objects- look into serialization/deserialization (many options available there) and the System.IO namespace for persisting to disk.
The only way to prevent overwriting the same file each time is to make the file name unique e.g.
FileName<TimeStamp>.ini
Or
FileName<Guid>.ini
Or you could even do what windows does with duplicate files and check how many already exist and append a new number onto the end e.g.
FileName.ini
FileName1.ini
FileName2.ini
Personally I would go with the timestamp/GUID approach. Here's some example code
class Program
{
static void Main()
{
for (int i = 0; i <= 10; i++)
{
SaveConfiguration();
Thread.Sleep(500);
}
}
private static void SaveConfiguration()
{
string fileName = System.IO.Path.Combine(#"Config\File\Dir", String.Format("Config{0:yyyyMMddHHmmss}.ini", DateTime.UtcNow));
System.IO.File.WriteAllText(fileName, "File contents");
}
}
How can I bundle a folder with a one click application and reference those files/folders after?
Seems rather simple but I just can't figure out how.
As in, I had the file index.html in the folder UI and I wanted to package that with the application, then I want to get the stream for that file with the string "/UI/index.html" but instead of just index.html, an entire website.
Add the folder to your VS Project, right-click on it and select "embed as resource". That will make the files in the folder be embedded in the .NET assembly. To get the file contents in your program, you can use something like this:
public class ReadResource
{
public string ReadInEmbeddedFile (string filename) {
// assuming this class is in the same assembly as the resource folder
var assembly = typeof(ReadResource).Assembly;
// get the list of all embedded files as string array
string[] res = assembly.GetManifestResourceNames ();
var file = res.Where (r => r.EndsWith(filename)).FirstOrDefault ();
var stream = assembly.GetManifestResourceStream (file);
string file_content = new StreamReader(stream).ReadToEnd ();
return file_content;
}
}
In the above function I assume your files a text/html files; if not, you can change it not to return string but byte[], and use a binary stream reader for that.
I also select the files by file.EndsWith() which is enough for my needs; if your folder has a deep nested structure you need to modify that code to parse for folder levels.
Perhaps there is a better way, but given the content is not too large you can embed binaries directly into your program as a base64 string. In this case it would need to be an archive of the folder. You would also need to embed the dll used for unzipping that archive (If I understood correctly you want to have single .exe and nothing more).
Here is a short example
// create base64 strings prior to deployment
string unzipDll = Convert.ToBase64String(File.ReadAllBytes("Ionic.Zip.dll"));
string archive = Convert.ToBase64String(File.ReadAllBytes("archive.zip"));
string unzipDll = "base64string";
string archive = "probablyaverylongbase64string";
File.WriteAllBytes("Ionic.zip.dll", Convert.FromBase64String(unzipDll));
File.WriteAllBytes("archive.zip", Convert.FromBase64String(archive);
Ionic.Zip.ZipFile archive = new Ionic.Zip.ZipFile(archiveFile);
archive.ExtractAll("/destination");
The unzipping library is DotNetZip. It's nice because you need just a single dll. http://dotnetzip.codeplex.com/downloads/get/258012
Edit:
Come to think of it, as long as you write the Ionic.dll to the working directory of the .exe you shouldn't need to use the dynamic dll loading so I removed that part to simplify the answer (it would still need to be written before you reach the method it is in though).
I start my application from withint Visual Studio 2010.
I add then some files into my application and each file type`s icon like icon from doc,docx,xls,pdf etc are added as String/Bitmap key/value pair to my IconImages.Resx file via
private void DumpTempResourceToRealResourceFile(IDictionary<String, Bitmap> tempResource)
{
using (ResXResourceWriter writer = new ResXResourceWriter("IconImages.Resx"))
{
foreach (KeyValuePair<String,Bitmap> item in tempResource)
{
writer.AddResource(item.Key, item.Value);
}
writer.Generate();
}
}
When the icons are added to the resource I close the application.
Then I start my application again with VS 2010 and add some files within my document application. The file types are written again to my IconImages.Resx.
Then I close my application and check the IconImages.Resx file under the \bin\ folder and the previous saved images are gone and I have new/different ones now.
Why can I not say OPEN a .resx file and append stuff to it? Everytime I create a ResourceWriter object with the same name "IconImages.Resx" I overwrite the previous added stuff and thats stupid.
How can my IconImages.Resx file stay alive over an application session without being overwritten by other stuff I add?
I haven't used ResXResourceWriter, but usually *Writer classes simply write a data file from scratch.
If you want to "append" new data you would typically have to use a *Reader class to deserialise the existing data into memory, then merge/add in any new data you wish to, and use a *Writer object to then write the resulting data back out. Take a look at ResXResourceReader to see if it supports what you need to do this.
I am having now a lookup table "FiletypeImage" with the filetype ".docx" and the raw binary data aka blob. This table gets retrieved in my documentService and cached in a static variable. with a Get and Add method which are called by my DocumentListViewModel. Its very fast thx to sqlite :)