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How to be OnTop but not OnTop of a full screen application

So I have tried searching for the better part of a day for the answer to a simple question. I want my C# application to popup another winform on a timer and then close it after a delay. Simple enough, done and done. Now my issue is that I want it to actually be on top of other applications UNLESS they are full screen. By that I mean a true full screen application such as a game. I do not want to interfere with such an application since it should take priority over my application.
The issue is that I am using the 'OnTop' property on the popup form and, while it works perfectly for any other applications I have been testing it while playing a full screen game and the form, when it "Show()"s, takes the full screen application and drops it into windowed mode.
Is this the intended effect of the 'OnTop' property with full screen applications? If so is there a way that I can have my form popup on top of normal windowed windows and not interfere with full screen applications?
Any links, example, a kick in the general direction is great. The only hits that I come up with when searching for winforms involving full screen is people trying to get their application into full screen or having their application take focus away from another application.
Thanks on advance.
(I didn't post any code due to it just being a simple winform that is "formX:Show()" on a timer with the "onTop" property set)
(EDIT) So thanks to awilson53 for putting me on the right track I was able to find a method (albeit somewhat picky) to determine if an application is full screen. Seems kinda simple, and an "well duh", answer after all is said and done.
95% of the credit goes to the author of the article: http://www.richard-banks.org/2007/09/how-to-detect-if-another-application-is.html
~5% goes to awilson53 for getting me on the right track. :)

Check out this wrapper for the EnumWindows function. This will allow you to enumerate all open windows and determine their window state. You will want to check the EnumWindowItem.Maximized property, and if it is true set your OnTop property to false. If none of the EnumWindowItem's return Maximised you can set OnTop to true.

Window emitting a sound when I try to restore it from the taskbar

I'm working on a rather big project with my team and after a while, we struck into a big problem.
Infact when we minimize the main window of the application, clicking on the taskbar to restore it results in a "bing" sound (the one that windows uses when you are trying to interact with a background window when a modal dialog is opened on it). I can't restore the window except if I press ENTER button (after obviusly clicking on it).
We are using XNA to render something inside a WindowsFormsHost component in our WPF application and the problem comes out when we change something that is not connected directly with wpf (something inside the rendering engine, so it works only with XNA).
I can't post any code because I don't own any rights of it and would be meaningless because the project is enough big.
So my question is: what are the things that can produce a problem like this one (unable to restore window sound) when you click on the taskbar?
At least I can understand where to search for this bug, because I don't even understand where I shall dirt my hands in.
Important notes: I'm using a splash screen and the problems come up when I do something on a second window (so not directly the main one) which is not modal
Thanks for any suggestion

We solved the problem by finding out that there is a bug with an external component that we used inside our application. Still I don't understand how this bug has been created, if someone has a better answer I'll mark it.

Issue using Show Desktop with SetParent in WPF

I am working on a simple active desktop replacement for a school that is migrating to Windows 7. The idea is to create a window with a few large buttons with pictures on so that young children who have trouble reading can use them.
I am using SetParent() to set my window's parent to 'Progman' so that it is always at the back and is not minimised when a user chooses to 'Show Desktop'. Everything works fine on Windows XP but on Windows 7 when users click 'Show Desktop' the window remains but the contents are replaced with the users Windows background. The buttons still work (you just can't see them) and if you resize or otherwise update the window they appear again. A picture of the problem:
Any ideas why this is happening? Does anyone know a way I could force a refresh of the window when 'Show Desktop' is pressed?

I suspect in your case your app is throwing an exception but not crashing. WPF apps have a tendency to do this if the exception is thrown during the ctor of some UI element. It can disrupt the rendering stack.
I tried to reproduce the problem but was unsuccessful. From my tests I was able to get the handle to 'Progman' and set the main window as the parent when using the Windows 7 basic theme (no Arrow glass).
When I used the Arrow theme, calling SetParent would cause the window to vanish. A little research turned up a possible fix. Instead of setting the parent as the 'Progman' window, you can try using the 'SysListView32' child (the child window used to hold the desktop icons).
The problem is obtaining 'SysListView32' isn't easy. It used to be a matter of traversing through 'Progman' to 'SHELLDLL_DefView' and then 'SysListView32', however, Windows 7 has changed that. 'SHELLDLL_DefView' is now a child of WorkerW.... some of the time.
Here is the best article I could find explaining this:
http://fernandomachadopirizen.wordpress.com/2010/08/09/give-me-a-handle-and-i-will-move-the-earth/

calling the user attention outside of app

I want to create an alarm app for myself. On certain conditions (i need to poll websites) i want my app to inform me and make it HARD TO MISS. So i can take appropriate action or ignore it if i need to do something else.
I wrote a test app and using a BalloonTip (ShowBalloonTip with notifyIcon) isnt great. One of my previous apps brings the window in front of you and does a MessageBox however that doesnt always work or work well (if i somehow miss it or accidentally forget to click ok no futher messages will occur).
What are your suggestions?

You could also make it a system tray application and change the icon out if there is something which requires attention, a la a messenger application. That may not be "hard to miss" but I am trained (for better or worse) to look down at the icon tray when I see something blinking.

Where I work, we have a TimeTracker application (built in house) with which developers are supposed to log what we worked on and when. I am notorious for not using it. So, I wrote my own (Windows Forms) version for my own use which, every hour opens up and takes over my screen:
It is a frameless dialog which consumes the entire screen.
TopMost = True.
On resize, it sets WindowsState = Normal and resizes to fill the screen.
While it is open, it polls for taskmgr.exe and procexp.exe and kills them if found.
It disables the start menu to prevent cmd.exe commands from the menu in Windows 7.
The only way to close it is to enter a log, only then is the OK button shown!
So far, it's working out well - no one has been able to break it!
My less drastic suggestion would be to have a notification which pops up momentarily above the system tray. After a second or two, fade it out. Keep showing the notification every 30 seconds or so until it is dismissed.

Always-on-top window in the corner of the screen?

You could always set your window to be a top most window, make it full screen, and activate it. It would be very, very hard to miss...
Granted, it would also be very annoying, and not something I'd do to other users...
My "real" suggestion would be to use sound along with standard notification methods if this is going to be used by other people, as that's an easy way to grab attention without necessarily killing their workflow. A modeless window that appears in a corner of the screen, especially if combined with sound and color, can be very effective to grab attention.

The industry has been adopting these ambient orb devices and variations of it when such a hard-to-miss notification is required. It is used for tracking the stock-market and for broken-daily-builds.
http://www.ambientdevices.com/cat/orb/MAN_Ambient%20Orb_3-23-03.pdf
Regards

How can we prevent popup windows appearing on top of the application?

I have a fullscreen window, and I want to prevent pop up windows that appear at the right bottom corner of my screen. I set the Topmost property to true, but apparently it does not help. I also tried activating the form and giving it the focus once it got deactivated, but that did not help either. What is a way to ignore such windows while the user is engaged with the fullscreen app? I am .NET programming in C#.

You can't do it, this fails the "what if two programs tried to do this" test:
those popups are just normal windows like yours, they also use the same top-most style you are using.
if there was a way to always be above other topmost windows they would have used it too rendering it useless (because the authors of the other apps are just as concerned about the user missing their "super important" notifications as you are about them interfering with your full screen app).
You can try and play dirty tricks to force your window to the top of the top-most z-order, but those popups are likely to use the exact same tricks, again making this all useless (and as an extra bonus all those dirty tricks can turn your app into a compatibility nightmare).

You can disable these balloon notifications using these steps:
Click Start, Run and type regedit
Navigate to the following subkey:
HKEY_CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\Explorer\Advanced
In the right pane, create a DWORD value named EnableBalloonTips
Double-click the new entry, and give it a value of 0.
Quit Registry Editor.
Log off Windows (this is not very cool...), and then log back on for the changes to take effect.
if you need help in how doing this by program, don't hesitate to ask ;)

I don't think that you can block all the popups, windows might not let you do that. But you can try with SetWindowPos function and pass it HWND_TOP parameter. It might work a little better than Topmost = true.

I used a sys tray popup control on my personal project SvnRadar written in WPF.
The control is at the http://www.hardcodet.net/projects/wpf-notifyicon written by Philipp Sumi.
Very nice.Only thing you will be need to "detach" it from the SysTray screen coordinates and
make it appear where you wish.
Hope it helps.
Good luck.