String caching. Memory optimization and re-use - c#

I am currently working on a very large legacy application which handles a large amount of string data gathered from various sources (IE, names, identifiers, common codes relating to the business etc). This data alone can take up to 200 meg of ram in the application process.
A colleague of mine mentioned one possible strategy to reduce the memory footprint (as a lot of the individual strings are duplicate across the data sets), would be to "cache" the recurring strings in a dictionary and re-use them when required. So for example…
public class StringCacher()
{
public readonly Dictionary<string, string> _stringCache;
public StringCacher()
{
_stringCache = new Dictionary<string, string>();
}
public string AddOrReuse(string stringToCache)
{
if (_stringCache.ContainsKey(stringToCache)
_stringCache[stringToCache] = stringToCache;
return _stringCache[stringToCache];
}
}
Then to use this caching...
public IEnumerable<string> IncomingData()
{
var stringCache = new StringCacher();
var dataList = new List<string>();
// Add the data, a fair amount of the strings will be the same.
dataList.Add(stringCache.AddOrReuse("AAAA"));
dataList.Add(stringCache.AddOrReuse("BBBB"));
dataList.Add(stringCache.AddOrReuse("AAAA"));
dataList.Add(stringCache.AddOrReuse("CCCC"));
dataList.Add(stringCache.AddOrReuse("AAAA"));
return dataList;
}
As strings are immutable and a lot of internal work is done by the framework to make them work in a similar way to value types i'm half thinking that this will just create a copy of each the string into the dictionary and just double the amount of memory used rather than just pass a reference to the string stored in the dictionary (which is what my colleague is assuming).
So taking into account that this will be run on a massive set of string data...
Is this going to save any memory, assuming that 30% of the string values will be used twice or more?
Is the assumption that this will even work correct?

This is essentially what string interning is, except you don't have to worry how it works. In your example you are still creating a string, then comparing it, then leaving the copy to be disposed of. .NET will do this for you in runtime.
See also String.Intern and Optimizing C# String Performance (C Calvert)
If a new string is created with code like (String goober1 = "foo"; String goober2 = "foo";) shown in lines 18 and 19, then the intern table is checked. If your string is already in there, then both variables will point at the same block of memory maintained by the intern table.
So, you don't have to roll your own - it won't really provide any advantage. EDIT UNLESS: your strings don't usually live for as long as your AppDomain - interned strings live for the lifetime of the AppDomain, which is not necessarily great for GC. If you want short lived strings, then you want a pool. From String.Intern:
If you are trying to reduce the total amount of memory your application allocates, keep in mind that interning a string has two unwanted side effects. First, the memory allocated for interned String objects is not likely be released until the common language runtime (CLR) terminates. The reason is that the CLR's reference to the interned String object can persist after your application, or even your application domain, terminates. ...
EDIT 2 Also see Jon Skeets SO answer here

This is already built-in .NET, it's called String.Intern, no need to reinvent.

You can acheive this using the built in .Net functionality.
When you initialise your string, make a call to string.Intern() with your string.
For example:
dataList.Add(string.Intern("AAAA"));
Every subsequent call with the same string will use the same reference in memory. So if you have 1000 AAAAs, only 1 copy of AAAA is stored in memory.

Related

C# - how does variable scope and disposal impact processing efficiency?

I was having a discussion with a colleague the other day about this hypothetical situation. Consider this pseudocode:
public void Main()
{
MyDto dto = Repository.GetDto();
foreach(var row in dto.Rows)
{
ProcessStrings(row);
}
}
public void ProcessStrings(DataRow row)
{
string string1 = GetStringFromDataRow(row, 1);
string string2 = GetStringFromDataRow(row, 2);
// do something with the strings
}
Then this functionally identical alternative:
public void Main()
{
string1 = null;
string2 = null,
MyDto dto = Repository.GetDto();
foreach(var row in dto.Rows)
{
ProcessStrings(row, string1, string2)
}
}
public void ProcessStrings(DataRow row, string string1, string string2)
{
string1 = GetStringFromDataRow(row, 1);
string2 = GetStringFromDataRow(row, 2);
// do something with the strings
}
How will these differ in processing when running the compiled code? Are we right in thinking the second version is marginally more efficient because the string variables will take up less memory and only be disposed once, whereas in the first version, they're disposed of on each pass of the loop?
Would it make any difference if the strings in the second version were passed by ref or as out parameters?
When you're dealing with "marginally more efficient" level of optimizations you risk not seeing the whole picture and end up being "marginally less efficient".
This answer here risks the same thing, but with that caveat, let's look at the hypothesis:
Storing a string into a variable creates a new instance of the string
No, not at all. A string is an object, what you're storing in the variable is a reference to that object. On 32-bit systems this reference is 4 bytes in size, on 64-bit it is 8. Nothing more, nothing less. Moving 4/8 bytes around is overhead that you're not really going to notice a lot.
So neither of the two examples, with the very little information we have about the makings of the methods being called, creates more or less strings than the other so on this count they're equivalent.
So what is different?
Well in one example you're storing the two string references into local variables. This is most likely going to be cpu registers. Could be memory on the stack. Hard to say, depends on the rest of the code. Does it matter? Highly unlikely.
In the other example you're passing in two parameters as null and then reusing those parameters locally. These parameters can be passed as cpu registers or stack memory. Same as the other. Did it matter? Not at all.
So most likely there is going to be absolutely no difference at all.
Note one thing, you're mentioning "disposal". This term is reserved for the usage of objects implementing IDisposable and then the act of disposing of these by calling IDisposable.Dispose on those objects. Strings are not such objects, this is not relevant to this question.
If, instead, by disposal you mean "garbage collection", then since I already established that neither of the two examples creates more or less objects than the others due to the differences you asked about, this is also irrelevant.
This is not important, however. It isn't important what you or I or your colleague thinks is going to have an effect. Knowing is quite different, which leads me to...
The real tip I can give about optimization:
Measure
Measure
Measure
Understand
Verify that you understand it correctly
Change, if possible
You measure, use a profiler to find the real bottlenecks and real time spenders in your code, then understand why those are bottlenecks, then ensure your understanding is correct, then you can see if you can change it.
In your code I will venture a guess that if you were to profile your program you would find that those two examples will have absolutely no effect whatsoever on the running time. If they do have effect it is going to be on order of nanoseconds. Most likely, the very act of looking at the profiler results will give you one or more "huh, that's odd" realizations about your program, and you'll find bottlenecks that are far bigger fish than the variables in play here.
In both of your alternatives, GetStringFromDataRow creates new string every time. Whether you store a reference to this string in a local variable or in argument parameter variable (which is essentially not much different from local variable in your case) does not matter. Imagine you even not assigned result of GetStringFromDataRow to any variable - instance of string is still created and stored somewhere in memory until garbage collected. If you would pass your strings by reference - it won't make much difference. You will be able to reuse memory location to store reference to created string (you can think of it as the memory address of string instance), but not memory location for string contents.

Serializing a Dictionary to disk?

We have a Hashtable (specifically the C# Dictionary class) that holds several thousands/millions of (Key,Value) pairs for near O(1) search hits/misses.
We'd like to be able to flush this data structure to disk (serialize it) and load it again later (deserialize) such that the internal hashtable of the Dictionary is preserved.
What we do right now:
Load from Disk => List<KVEntity>. (KVEntity is serializable. We use Avro to serialize - can drop Avro if needed)
Read every KVEntity from array => dictionary. This regenerates the dictionary/hashtable internal state.
< System operates, Dictionary can grow/shrink/values change etc >
When saving, read from the dictionary into array (via myKVDict.Values.SelectMany(x => x) into a new List<KVEntity>)
We serialize the array (List<KVEntity>) to disk to save the raw data
Notice that during our save/restore, we lose the internal tashtable/dictionary state and have to rebuild it each time.
We'd like to directly serialize to/from Dictionary (including it's internal "live" state) instead of using an intermediate array just for the disk i/o. How can we do that?
Some pseudo code:
// The actual "node" that has information. Both myKey and myValue have actual data work storing
public class KVEntity
{
public string myKey {get;set;}
public DataClass myValue {get;set;}
}
// unit of disk IO/serialization
public List<KVEntity> myKVList {get;set;}
// unit of run time processing. The string key is KVEntity.myKey
public Dictionary<string,KVEntity> myKVDict {get;set;}
Storing the internal state of the Dictionary instance would be bad practice - a key tenet of OOP is encapsulation: that internal implementation details are deliberately hidden from the consumer.
Furthermore, the mapping algorithm used by Dictionary might change across different versions of the .NET Framework, especially given that CIL assemblies are designed to be forward-compatible (i.e. a program written against .NET 2.0 will generally work against .NET 4.5).
Finally, there are no real performance gains from serialising the internal state of the dictionary. It is much better to use a well-defined file format with a focus on maintainability than speed. Besides, if the dictionary contains "several thousands" of entries then that should load from disk in under 15ms by my reckon (assuming you have an efficient on-disk format). Finally, a data structure optimised for RAM will not necessarily work well on-disk where sequential reads/writes are better.
Your post is very adamant about working with the internal state of the dictionary, but your existing approach seems fine (albiet, it could do with some optimisations). If you revealed more details we can help you make it faster.
Optimisations
The main issues I see with your existing implementation is the conversion to/from Arrays and Lists, which is unnecessary given that Dictionary is directly enumerable.
I would do something like this:
Dictionary<String,TFoo> dict = ... // where TFoo : new() && implements a arbitrary Serialize(BinaryWriter) and Deserialize(BinaryReader) methods
using(FileStream fs = File.OpenWrite("filename.dat"))
using(BinaryWriter wtr = new BinaryWriter(fs, Encoding.UTF8)) {
wtr.Write( dict.Count );
foreach(String key in dict.Keys) {
wtr.Write( key );
wtr.Write('\0');
dict[key].Serialize( wtr );
wtr.Write('\0'); // assuming NULL characters can work as record delimiters for safety.
}
}
Assuming that your TFoo's Serialize method is fast, I really don't think you'll get any faster speeds than this approach.
Implementing a de-serializer is an exercise for the reader, but should be trivial. Note how I stored the size of the dictionary to the file, so the returned dictionary can be set with the correct size when it's created, thus avoiding the re-balancing problem that #spender describes in his comment.
So we're going to stick with our existing strategy given Dai's reasoning and that we have C# and Java compatibility to maintain (which means the extra tree-state bits of the C# Dictionary would be dropped on the Java side anyways which would load only the node data as it does right now).
For later readers still interested in this I found a very good response here that somewhat answers the question posed. A critical difference is that this answer is for B+ Trees, not Dictionaries, although in practical applications those two data structures are very similar in performance. B+ Tree performance closer to Dictionaries than regular trees (like binary, red-black, AVL etc). Specifically, Dictionaries deliver near O(1) performance (but no "select from a range" abilities) while B+ Trees have O(logb(X)) where b = base is usually large which makes them very performant compared to regular trees where b=2. I'm copy-pasting it here for completeness but all credit goes to csharptest.net for the B+ Tree code, test, benchmarks and writeup(s).
For completeness I'm going to add my own implementation here.
Introduction - http://csharptest.net/?page_id=563
Benchmarks - http://csharptest.net/?p=586
Online Help - http://help.csharptest.net/
Source Code - http://code.google.com/p/csharptest-net/
Downloads - http://code.google.com/p/csharptest-net/downloads
NuGet Package - http://nuget.org/List/Packages/CSharpTest.Net.BPlusTree

.NET small class with many instances optimization scenario?

I have millions of instances of class Data, I seek optimization advise.
Is there a way to optimize it in any way - save memory for example by serializing it somehow, although it will hurt the retrieval speed which is important too. Maybe turning the class to struct - but it seems that the class is pretty large for struct.
Queries for this objects can take hundreds-millions of these objects at a time. They sit in a list and queried by DateTime. The results are aggregated in different ways, many calculation can be applied.
[Serializable]
[DataContract]
public abstract class BaseData {}
[Serializable]
public class Data : BaseData {
public byte member1;
public int member2;
public long member3;
public double member4;
public DateTime member5;
}
Unfortunately, while you did specify that you want to "optimize", you did not specify what the exact problem is you mean to tackle. So I cannot really give you more than general advice.
Serialization will not help you. Your Data objects are already stored as bytes in memory. Nor will turning it into a struct help. The difference between a struct and a class lies in their addressing and referencing behaviour, not in their memory footprint.
The only way I can think of to reduce the memory footprint of a collection with "hundreds-millions" of these objects would be to serialize and compress the entire thing. But that is not feasible. You would always have to decompress the entire thing before accessing it, which would shoot your performance to hell AND actually almost double the memory consumption on access (compressed and decompressed data both lying in memory at that point).
The best general advice I can give you is not to try to optimize this scenario yourself, but use specialized software for that. By specialized software, I mean a (in-memory) database. One example of a database you can use in-memory, and for which you already have everything you need on-board in the .NET framework, is SQLite.
I assume, as you seem to imply, that you have a class with many members, have a large number of instances, and need to keep them all in memory at the same time to perform calculations.
I ran a few tests to see if you could actually get different sizes for the classes you described.
I used this simple method for finding the in-memory size of an object:
private static void MeasureMemory()
{
int size = 10000000;
object[] array = new object[size];
long before = GC.GetTotalMemory(true);
for (int i = 0; i < size; i++)
{
array[i] = new Data();
}
long after = GC.GetTotalMemory(true);
double diff = after - before;
Console.WriteLine("Total bytes: " + diff);
Console.WriteLine("Bytes per object: " + diff / size);
}
It may be primitive, but I find that it works fine for situations like this.
As expected, almost nothing you can do to that class (turning it to a struct, removing the inheritance, or the method attributes) influences the memory being used by a single instance. As far as memory usage goes, they are all equivalent. However, do try to fiddle with your actual classes and run them through the given code.
The only way you could actually reduce the memory footprint of an instance would be to use smaller structures for keeping your data (int instead of long for example). If you have a large number of booleans, you could group them into a byte or integer, and have simple property wrappers to work with them (A boolean takes a byte of memory). These may be insignificant things in most situations, but for a hundred million objects, removing a boolean could make a difference of a hundred MB of memory. Also, be aware that the platform target you choose for your application can have an impact on the memory footprint of an object (x64 builds take up more memory then x86 ones).
Serializing the data is very unlikely to help. An in-memory database has it's upsides, especially if you are doing complex queries. However, it is unlikely to actually reduce the memory usage for your data. Unfortunately, there just aren't many ways to reduce the footprint of basic data types. At some point, you will just have to move to a file-based database.
However, here are some ideas. Please be aware that they are hacky, highly conditional, decrease the computation performance and will make the code harder to maintain.
It is often a case in large data structures that objects in different states will have only some properties filled, and the other will be set to null or a default value. If you can identify such groups of properties, perhaps you could move them to a sub-class, and have one reference that could be null instead of having several properties take up space. Then you only instantiate the sub-class once it is needed. You could write property wrappers that could hide this from the rest of the code. Have in mind that the worst case scenario here would have you keeping all the properties in memory, plus several object headers and pointers.
You could perhaps turn members that are likely to take a default value into binary representations, and then pack them into a byte array. You would know which byte positions represent which data member, and could write properties that could read them. Position the properties that are most likely to have a default value at the end of the byte array (a few longs that are often 0 for example). Then, when creating the object, adjust the byte array size to exclude the properties that have the default value, starting from the end of the list, until you hit the first member that has a non-default value. When the outside code requests a property, you can check if the byte array is large enough to hold that property, and if not, return the default value. This way, you could potentially save some space. Best case, you will have a null pointer to a byte array instead of several data members. Worst case, you will have full byte arrays taking as much space as the original data, plus some overhead for the array. The usefulness depends on the actual data, and assumes that you do relatively few writes, as the re-computation of the array will be expensive.
Hope any of this helps :)

In memory representation of large data

Currently, I am working on a project where I need to bring GBs of data on to client machine to do some task and the task needs whole data as it do some analysis on the data and helps in decision making process.
so the question is, what are the best practices and suitable approach to manage that much amount of data into memory without hampering the performance of client machine and application.
note: at the time of application loading, we can spend time to bring data from database to client machine, that's totally acceptable in our case. but once the data is loaded into application at start up, performance is very important.
This is a little hard to answer without a problem statement, i.e. what problems you are currently facing, but the following is just some thoughts, based on some recent experiences we had in a similar scenario. It is, however, a lot of work to change to this type of model - so it also depends how much you can invest trying to "fix" it, and I can make no promise that "your problems" are the same as "our problems", if you see what I mean. So don't get cross if the following approach doesn't work for you!
Loading that much data into memory is always going to have some impact, however, I think I see what you are doing...
When loading that much data naively, you are going to have many (millions?) of objects and a similar-or-greater number of references. You're obviously going to want to be using x64, so the references will add up - but in terms of performance the biggesst problem is going to be garbage collection. You have a lot of objects that can never be collected, but the GC is going to know that you're using a ton of memory, and is going to try anyway periodically. This is something I looked at in more detail here, but the following graph shows the impact - in particular, those "spikes" are all GC killing performance:
For this scenario (a huge amount of data loaded, never released), we switched to using structs, i.e. loading the data into:
struct Foo {
private readonly int id;
private readonly double value;
public Foo(int id, double value) {
this.id = id;
this.value = value;
}
public int Id {get{return id;}}
public double Value {get{return value;}}
}
and stored those directly in arrays (not lists):
Foo[] foos = ...
the significance of that is that because some of these structs are quite big, we didn't want them copying themselves lots of times on the stack, but with an array you can do:
private void SomeMethod(ref Foo foo) {
if(foo.Value == ...) {blah blah blah}
}
// call ^^^
int index = 17;
SomeMethod(ref foos[index]);
Note that we've passed the object directly - it was never copied; foo.Value is actually looking directly inside the array. The tricky bit starts when you need relationships between objects. You can't store a reference here, as it is a struct, and you can't store that. What you can do, though, is store the index (into the array). For example:
struct Customer {
... more not shown
public int FooIndex { get { return fooIndex; } }
}
Not quite as convenient as customer.Foo, but the following works nicely:
Foo foo = foos[customer.FooIndex];
// or, when passing to a method, SomeMethod(ref foos[customer.FooIndex]);
Key points:
we're now using half the size for "references" (an int is 4 bytes; a reference on x64 is 8 bytes)
we don't have several-million object headers in memory
we don't have a huge object graph for GC to look at; only a small number of arrays that GC can look at incredibly quickly
but it is a little less convenient to work with, and needs some initial processing when loading
additional notes:
strings are a killer; if you have millions of strings, then that is problematic; at a minimum, if you have strings that are repeated, make sure you do some custom interning (not string.Intern, that would be bad) to ensure you only have one instance of each repeated value, rather than 800,000 strings with the same contents
if you have repeated data of finite length, rather than sub-lists/arrays, you might consider a fixed array; this requires unsafe code, but avoids another myriad of objects and references
As an additional footnote, with that volume of data, you should think very seriously about your serialization protocols, i.e. how you're sending the data down the wire. I would strongly suggest staying far away from things like XmlSerializer, DataContractSerializer or BinaryFormatter. If you want pointers on this subject, let me know.

Strings and Garbage Collection

I have heard conflicting stories on this topic and am looking for a little bit of clarity.
How would one dispose of a string object immediately, or at the very least clear traces of it?
That depends. Literal strings are interned per default, so even if you application no longer references it it will not be collected, as it is referenced by the internal interning structure. Other strings are just like any other managed object. As soon as they are no longer reference by your application they are eligible for garbage collection.
More about interning here in this question: Where do Java and .NET string literals reside?
If you need to protect a string and be able to dispose it when you want, use System.Security.SecureString class.
Protect sensitive data with .NET 2.0's SecureString class
I wrote a little extension method for the string class for situations like this, it's probably the only sure way of ensuring the string itself is unreadable until collected. Obviously only works on dynamically generated strings, not literals.
public unsafe static void Clear(this string s)
{
fixed(char* ptr = s)
{
for(int i = 0; i < s.Length; i++)
{
ptr[i] = '\0';
}
}
}
This is all down to the garbage collector to handle that for you. You can force it to run a clean-up by calling GC.Collect(). From the docs:
Use this method to try to reclaim all
memory that is inaccessible.
All objects, regardless of how long
they have been in memory, are
considered for collection; however,
objects that are referenced in managed
code are not collected. Use this
method to force the system to try to
reclaim the maximum amount of
available memory.
That's the closest you'll get me thinks!!
I will answer this question from a security perspective.
If you want to destroy a string for security reasons, then it is probably because you don't want anyone snooping on your secret information, and you expect they might scan the memory, or find it in a page file or something if the computer is stolen or otherwise compromised.
The problem is that once a System.String is created in a managed application, there is not really a lot you can do about it. There may be some sneaky way of doing some unsafe reflection and overwriting the bytes, but I can't imagine that such things would be reliable.
The trick is to never put the info in a string at all.
I had this issue one time with a system that I developed for some company laptops. The hard drives were not encrypted, and I knew that if someone took a laptop, then they could easily scan it for sensitive info. I wanted to protect a password from such attacks.
The way I delt with it is this: I put the password in a byte array by capturing key press events on the textbox control. The textbox never contained anything but asterisks and single characters. The password never existed as a string at any time. I then hashed the byte array and zeroed the original. The hash was then XORed with a random hard-coded key, and this was used to encrypt all the sensitive data.
After everything was encrypted, then the key was zeroed out.
Naturally, some of the data might exist in the page file as plaintext, and it's also possible that the final key could be inspected as well. But nobody was going to steal the password dang it!
There's no deterministic way to clear all traces of a string (System.String) from memory. Your only options are to use a character array or a SecureString object.
One of the best ways to limit the lifetime of string objects in memory is to declare them as local variables in the innermost scope possible and not as private member variables on a class.
It's a common mistake for junior developers to declare their strings 'private string ...' on the class itself.
I've also seen well-meaning experienced developers trying to cache some complex string concatenation (a+b+c+d...) in a private member variable so they don't have to keep calculating it. Big mistake - it takes hardly any time to recalculate it, the temporary strings are garbage collected almost immediately when the first generation of GC happens, and the memory swallowed by caching all those strings just took available memory away from more important items like cached database records or cached page output.
Set the string variable to null once you don't need it.
string s = "dispose me!";
...
...
s = null;
and then call GC.Collect() to revoke garbage collector, but GC CANNOT guarantee the string will be collected immediately.

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